SMART Number of
SMART HMMs

639

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Modular
Architecture
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References Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864
Letunic et al. (2002) Nucleic Acids Res 30, 242-244		 SMART STATUS:
RUNNING
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Multi-SMART 

             

Sequence analysis

You may use either the swissprot/sptrembl sequence identifier (ID) / accession number (ACC) or the protein sequence itself to request the smart service

Sequence ID or ACC

Sequence


HMMER searches of the SMART database occur by default. You may also find:
Outlier homologues and homologues of known structure
PFAM domains
signal peptides
internal repeats
Architecture analysis

You can search for proteins with combinations of specific domains in different species or taxonomic ranges.
Domain selection
Examples: TyrKc AND SH3 AND NOT SH2
UNIQUE SH2

Taxonomic selection

Select a taxonomic range via the selection box or type it into the text box below:
Examples: Dictyostelium discoideum
Porifera
 

You can try an Advanced Query if you're familiar with SQL.

Alert

If you want to be automatically informed each time a new protein with a defined domain composition is deposited in databases, please use 'alert SMART' (this facility is also available following an architecture analysis query)

Domains detected by SMART

You can search for keywords in the domain annotation

  • Browse the database of all available domains in the SMART database
  • See a list of recent domain changes

If you think a new domain should be added to SMART, please contact us.


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SMART
Info: 		Software version: Number of SMART HMMs: Last sequence database update:
3.3 639 03 Apr 2002
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